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Drosten C, Muth D, Corman VM, Hussain R, Al Masri M, Haj Omar W, Landt O, Assiri A, Eckerle I, Al Shangiti A, Al-Tawfig JA, Albarrak A, Zumla A, Rambaut A & Memish ZA (2015) Clinical Infectious Diseases 60, 369-377.Gire SK, Goba A, Andersen KG, Sealfon RSG, Park DJ, Kanneh L, Jalloh S, Momoh M, Fullah M, Dudas G, Wohl S, Moses LM, Yozwiak NL, Winnicki S, Matranga CB, Malboeuf CM, Qu J, Gladden AD, Schaffner SF, Yang X, Jiang P-P, Nekoui M, Colubri A, Coomber MR, Fonnie M, Moigboi A, Gbakie M, Kamara FK, Tucker V, Konuwa E, Saffa S, Sellu J, Jalloh AA, Kovoma A, Koninga J, Mustapha I, Kargbo K, Foday M, Yillah M, Kanneh F, Robert W, Massally JLB, Chapman SB, Bochicchio J, Murphy C, Nusbaum C, Young S, Birren BW, Grant DS, Scheiffelin JS, Lander ES, Happi C, Gevao SM, Gnirke A, Rambaut A, Garry RF, Khan SH & Sabeti PC. Cotten M, Watson SJ, Zumla AI, Makhdoom HQ, Palser AL, Swee Hoe Ong, Al Rabeeah AA, Alhakeem RF, Assiri A, Al-Tawfiq JA, Albarrak A, Barry M, Shibl A, Alrabeah FA, Hajjar S, Balkhy HH, Flemban H, Rambaut A, Kellam P & Memish ZA (2014) MBio 5, e01062-13.The evolution of emerging human viral pathogens, in particular, fast evolving RNA viruses that have been sampled through time.Inferring evolutionary and population dynamic processes from molecular sequence data.Donnelly & Rambaut A (2016) PLo S Pathogens 12, e1005525. Pybus, Rambaut A, Kellam P, Goodfellow I & Cotten M (2016) Virus Evolution 2, vew016.Ladner JT, Wiley MR, Mate S, Dudas G, Prieto K, Lovett S, Nagle ER, Beitzel B, Gilbert ML, Fakoli L, Diclaro JW, Schoepp RJ, Fair J, Kuhn JH, Hensley LE, Park DJ, Sabeti PC, Rambaut A, Sanchez-Lockhart M, Bolay FK, Kugelman JR & Palacios, G (2015) Cell Host and Microbe 18, 659-669.Models of molecular evolution for phylogenetic reconstruction using maximum likelihood and Bayesian inference. Nichol, Moses Massaquoi, Francis Kateh, Peter Clement, Alex Gasasira, Fatorma Bolay, Stephan S. Scott Laney, Tolbert Nyenswah, Athalia Christie & Palacios G (2016) Science Advances 2, e1600378.Molecular clock techniques including auto-correlated clocks and over-dispersed clocks. Lorenzo-Redondo R, Fryer HR, Bedford T, Kim E, Archer J, Kosakovsky Pond, SL, Chung Y, Penugonda S, Chipman JG, Fletcher CV, Schacker TW, Malim MH, Rambaut A, Haase AT, Mc Lean AR & Wolinsky SM (2016) Nature 530, 51-56.

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